Graph selection for ggm_compare_explore
Objects
Source: R/select.ggm_compare_bf.R
select.ggm_compare_explore.Rd
Provides the selected graph (of differences) based on the Bayes factor williams2020comparingBGGM.
Usage
# S3 method for class 'ggm_compare_explore'
select(object, BF_cut = 3, ...)
Value
The returned object of class select.ggm_compare_explore
contains
a lot of information that is used for printing and plotting the results.
For users of BGGM, the following are the useful objects:
adj_10
Adjacency matrix for which there was evidence for a difference.adj_10
Adjacency matrix for which there was evidence for a null relationpcor_mat_10
Selected partial correlation matrix (weighted adjacency; only for two groups).
See also
explore
and ggm_compare_explore
for several examples.
Examples
# \donttest{
##################
### example 1: ###
##################
# data
Y <- bfi
# males and females
Ymale <- subset(Y, gender == 1,
select = -c(gender,
education))[,1:10]
Yfemale <- subset(Y, gender == 2,
select = -c(gender,
education))[,1:10]
# fit model
fit <- ggm_compare_explore(Ymale, Yfemale,
iter = 250,
type = "continuous",
progress = FALSE)
E <- select(fit, post_prob = 0.50)
# }